species:   Trree
pid:       PID0118
parent:    Tre-milR-11
paralog:   
locus:     GL985064.1:154854-154920
matures:   ['UGGAGACGUGGAGCCGGA', 'AGCCCGCGGAAUCUAAU']
srr:       SRR847119
genome:    /Users/jax/+Genomes/Fungal_genomes/Trree.GCA_000167675.2_v2.0_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Kang2013-jt.SRR847119.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Kang2013-jt.SRR847119.cram GL985064.1:154854-154920

0 out of bounds
2 alignments
1 proper strand
1 stranded perfect matches

      **********************           *********************       
UGCUCAUCUUUGGAGACGUGGAGCCGGAUAGCCUUUCUCUCAGCCCGCGGAAUCUAAUGAUCUGGCA
((((.(((.(((((..(((((.((..((.((.....)).)).)))))))...))))).)))..))))
----------UGGAGACGUGGAGCCGGA--------------------------------------- l=18 a=0 c
-----------------------------------------AGCCCGCGGAAUCUAAU--------- l=17 a=0 c*
--------UUUGGAGACGUGGAGCCGGA--------------------------------------- l=20 a=1 ma
-----------------------------------------AGCCCGCGGAAUCUAAUGA------- l=19 a=0 ma*

--------UUUGGAGACGUGGAGCCGGA--------------------------------------- l=20 a=1 (ma)

mb-01011
ax-1001011
ku-01
ss-100110101100
fn-001
